Package index • cocomo

All functions

analyze_split_or_merge_event(): Analyze split or merge event

create_trajectories_kml(): Create a KML that shows animal trajectories (viewable on Google Earth Pro)

generate_movement_and_calls_visualization(): Make a visualization of individual positions and calls during a time period specified by the user.

get_angle_between_vectors(): Get angle between vectors in radians or degrees

get_directedness(): Get directedness

get_group_centroid(): Get group centroid

get_group_dyadic_distances(): Get group dyadic distances

get_group_elongation(): Get group polarization

get_group_heading_and_speed(): Get group heading

get_group_polarization(): Get group polarization

get_heading_and_speed_spatial(): Get spatially discretized heading and speed over time

get_heading_and_speed_temporal(): Get heading and speed over time (temporal)

get_local_density(): Get local density

get_nearest_neighbor_distance(): Get nearest neighbor distance

get_position_relative_to_group(): Get positions relative to group

get_pulls_and_anchors(): Get pulls and anchors

get_pulls_and_anchors_with_NA(): Wrapper for get_pulls_and_anchors function, handling datasets with NAs

get_spatially_discretized_trajectories(): Get spatially discretized trajectories

get_speed(): Get speed

get_together_sticky(): Get whether two individuals are together, using a "sticky" definition

get_turn_and_speed_influence_simplified(): Get simplified turn and speed influence

identify_splits_and_merges(): Identify group splits and merges from multi-individual trajectory data

import_axytrek_gps_file(): Import Axy-Trek GPS file

import_behavioral_seqs_to_matrix(): Import behavioral sequences (output from classifier) to matrix format

latlon_to_utm(): Latitude / longitude to UTM conversion

meerkat_check_data_availability_sheet(): Check meerkat data availability sheets for any inconsistencies or errors

meerkat_compare_gps_data_to_recording_intervals(): Compare recorded meerkat GPS data to recording intervals noted in metadata

meerkat_import_meerkat_gps_data(): Import meerkat GPS data

meerkat_synch_audio_file_labels_to_UTC(): Synch labels within audio file to UTC time

parse_audition_time(): Parse Adobe Audition formatted time

plot_behav_and_calls(): Plot individual behavior and calls during a time period specified by the user. Also include a summary of the behavior of the rest of the group.

plot_network_matrix(): Plot network matrix

plot_pull_or_anchor_event(): Plot pull or anchor event

plot_y_conditioned_on_x(): Plot a statistic of y conditioned on the value of x

preprocess_gps_level0_to_level1(): Preprocess GPS data (in matrix format) from level 0 to level 1

reformat_matrix_to_df(): Convert from matrix format to dataframe

reformat_movebank_to_matrix(): Reformat Movebank to matrix format

utm_to_latlon(): UTM to latitude / longitude conversion