Plot individual behavior and calls during a time period specified by the user. Also include a summary of the behavior of the rest of the group.

Usage

plot_behav_and_calls(
  behavs,
  calls_array,
  behavs_key,
  focal_ind,
  t0,
  tf,
  nonfocal_calls_to_plot = NULL,
  nonfocal_behavs_to_plot = NULL,
  smooth_window = 31
)

Arguments

behavs: matrix of dimensions n_inds x n_times where behavs[i,t] gives the behavior (numeric) of individual i at time step t
calls_array: array of dimensions n_inds x n_times x n_calltypes where calls_array[i,t,c] indicates the number of calls of type c given by the individual i at time step t
behavs_key: data frame of behavior types with columns behav (behavior string) and int_value (its integer value in the behavs matrix)
focal_ind: integer giving the index of the focal individual
t0: integer giving the time step to start at
tf: integer giving the time step to stop at
nonfocal_calls_to_plot: vector of character strings indicating which calls to plot for nonfocal individuals (must match call types in calls_array 3rd dimension names)
nonfocal_behavs_to_plot: vector of character strings indicating which behaviors to plot for nonfocal individuals (must match behavior types in behavs_key)
smooth_window: smoothing window for indicating presence of nonfocal calls (in time steps)
calls_to_plot: vector of character strings indicating call types to plot (other call types will get lumped into an "other" category)
behavs_to_plot: vector of character strings indicating behavior types of plot (other behavior types will get lumped into an "other" category)

Author

Ariana Strandburg-Peshkin (primary author)

NOT YET CODE REVIEWED