Check meerkat data availability sheets for any inconsistencies or errors

Usage

meerkat_check_data_availability_sheet(
  path_to_data_availability_sheet,
  path_to_data_dir
)

Arguments

path_to_data_availability_sheet

path to data availability sheet on the server (.csv)

path_to_data_dir

path to the outer directory of the relevant deployment

Details

Reads in a data availability sheet and checks for the following:

1. Flag any missing fields

2. Check internal consistency of each row

• datatype, tagtype, and datasource are all consistent and into expected categories

• normalday column is either 0 or 1

• start and end are correctly formatted times

• filename contains individual id code

• filename has expected file extension

• in audio files, filename contains date matching start date

• normalday and comments columns make sense together

1. Check that file in filename column exists on server

2. Finds files on the server that involve an individual from the group on a date included in the deployment, but aren't in the data availability sheet

Outputs everything into two csvs for manual checking:

• path_to_data_availability_sheet_check.csv: rows to check in data availability sheet

• path_to_data_availability_sheet_missing.csv: potential missing files (filling gaps in data availability sheet)

Author

Ariana Strandburg-Peshkin (primary author)

NOT YET CODE REVIEWED